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May 24, 2019
2019 Lecture/Exercise 3.3
Lecture/Exercise 4.1 → OU processes on phylogenies and their interpretation Marguerite Butler and Brian O’Meara Butler: Testing Hypotheses of Evolution by Varying the Model Learning Objectives: Gain appreciation for how models can be used to test evolutionary hypotheses Building intuition about BM and OU processes by making your own simulations adding stochastic components to…
2019 Lecture/Exercise 3.2
Lecture/Exercise 3.3 → Brownian motion, contrasts and comparative methods Samantha Price and Joe Felsenstein Lecture projections First part of Joe Felsenstein’s lecture: Lecture3-2a.pdf First part of Samantha Price’s lecture: Lecture3-2b.pdf Second part of Joe Felsenstein’s lecture: Lecture3-2c.pdf Second part of Samantha Price’s lecture: Lecture3-2d.pdf Exercise materials For contrasts part of exercise: Text file of…
May 23, 2019
2019 R Exercise
Lecture 3.1 → Marguerite Butler An informal session to provide more R practice for those who want to improve their R skills using phylogenetic trees in R as a subject. We will start by asking for topics people would like to discuss or work on. Come with your biggest R frustrations. R workshop materials No…
2019 Lecture 2.3
R workshop → Evolution on a surface: the adaptive landscape by Stevan J. Arnold Projections PDF PPT Notes Notes for Lecture 2.3 Reading Lande 1980 Audio-recordings Lecture2-3.WMA Lecture2-3.mp3
2019 Exercise 2.2
Lecture 2.3 → Estimating a selection surface by Stevan J. Arnold and Monique N. Simon Exercise description Exercise_2.2_Readme_rev Exercise script and data file. Open the Rmd file in RStudio. Follow the instructions in that file about where to put the txt file. Exercise_2.2.Rmd Radix5_2012.txt References Arnold & Bennett 1988 Lande & Arnold 1983 Phillips &…
2019 Lecture 2.2
Exercise 2.2 → Selection as a surface by Stevan J. Arnold Projections PDF PPT Notes Notes for Lecture 2.2 Readings Arnold et al. 2001 Hohenlohe & Arnold 2008 Audio-recordings Lecture2-2.WMA Lecture2-2.mp3
2019 Exercise 2.1
Lecture 2.2 → Using MCMCglmm in R to estimate inheritance parameters by Patrick Carter Before our session on Tuesday please make sure you have installed the following R packages: ggplot2, MasterBayes, MCMCglmm, Plyr Before Class Tuesday please download the following 4 files; note that Model 101 output and Model 1201 output can only be…
2019 Lecture 2.1
Exercise 2.1 → Estimation of inheritance with fixed and random effects by Patrick Carter Projections Lecture 2.1.pdf Notes Readings Villemereui MCMCglmm tutorial Wilson_et_al-2010 Ecologists Guide to the Animal Model Wilson et al Ecologists Guide Supplementary File 5 – Tutorial MCMCglmm NEW REVISED – Wilson et al Supplementary File 5 – Tutorial MCMCglmm Audio-recordings Lecture2.1.WMA Lecture2.1.mp3
2019 Exercise 1.2
Lecture 2.1 → Multivariate inheritance: matrix algebra in R and PCP software by Stevan J. Arnold (with thanks to Josef Uyeda, Patrick C. Phillips, & Tyler Heather) In this class session, we will concentrate on using Patrick C. Phillips (PCP) software (h2boot) to estimate and compare G-matrices. If you are unfamiliar or out of practice with matrix…
2019 Lecture 1.4
Exercise 1.2 → Multivariate inheritance and response to selection by Stevan J. Arnold Lecture projections PDF PPT Notes Notes for Lecture 1.4 Readings Arnold 1994 Audio recordings Lecture1-4.WMA Lecture1-4.mp3
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