Plant Microbiology- Prof Doty

University of Washington Sites course site

ESRM 325/SEFS 523

This course will be taught in person (except for the recorded or via Zoom lectures as listed in the syllabus). Those unable to attend in person (such as for illness) should contact Prof. Doty via Canvas for a Zoom link at least 1 hour prior to class.

Enrolled students should use the Canvas site for the weekly modules

ENVIRONMENTAL APPLICATIONS OF PLANTS:  Bioenergy and Bioremediation

The course provides students with information about pressing environmental issues and many possible “green” solutions.  The course includes a discussion of global climate change and carbon sequestration by plants, since it links to both of the main topics of the course- phytoremediation and bioenergy. The students will learn about how plants remove and detoxify organic pollutants and sequester metal pollutants. They will learn the advantages and disadvantages of using phytoremediation compared to current engineering methods, and how the process can be improved. One lecture will focus on genetic engineering of plants, followed by lectures describing how this method can lead to increased degradation of pollutants. The bioenergy part of the course covers bioethanol, biomethanol, and biodiesel as alternative fuels. This overview is then followed by several lectures on the latest research on how current practices are being improved to make biofuel production economically and biologically feasible.  We end with a few lectures on climate change and how trees can significantly reduce carbon dioxide in the atmosphere.  My teaching style is with the optimism that we can use creativity and knowledge to solve environmental problems.

Required Texts

Since the course covers the latest material on phytoremediation and bioenergy, some of which is not yet published, the reading is based on reviews and current scientific papers, not text books. Students are expected to read the reviews prior to class to engage effectively in class discussions.

Evaluation [I plan to reduce the amount in the main exams by having weekly quizzes since I was given only an hourly Reader/Grader instead of a TA for the first time]

Grades will be based on a midterm (150 pts), a final examination (150 pts), weekly quizzes (50 pts total), and one outreach assignment worth 50 points.  For the undergrads (ESRM 325), the exams will be multiple choice and short essays.  For the grads (SEFS 523), the exams will be exclusively short-essay answers.  ESRM 325 exams will be conducted in class but via Canvas (bring a computer; printed versions will be available upon request). Class participation/attendance is an important aspect of learning.  There will be an extra credit opportunity (15 pts) to participate in Doty’s restoration project at the Union Bay Natural Area.

Syllabus

Th Sept 25- Overview on environmental applications of plants and conventional remediation technologies of polluted soils

Tu Sept 30- Conventional remediation methods (continued) and phytoremediation of organic chemicals

Th Oct 2- Phytoremediation of inorganic chemicals

Tu Oct 7- Enhancing phytoremediation using genetic engineering

Th Oct 9- Enhancing phytoremediation using endophytes

Tu Oct 14- Phytoremediation in Action: Guest seminar by Dr. Freeman of IntrinsyxEnvironmental [live but remote so no need to come to class in person]

Th Oct 16- United Nations and Environmental Applications of Trees

Tu Oct 21- Midterm Exam (phytoremediation) in class

Th Oct 23- Impacts of reliance on fossil fuels

Tu Oct 28- Bioethanol and cellulosic bioethanol

Th Oct 30- Biodiesel, biomethanol

Tu Nov 4- Improving the efficiency of biofuel production; PNW Bioenergy Projects: Poplar-based biofuels

Th Nov 6- PNW Bioenergy Projects: Forest residues-based fuels and Life Cycle Assessments (guest lecture by Prof. Ganguly)

Tu Nov 11- Veteran’s Day holiday

Th Nov 13- Global climate change

Tu Nov 18- Photosynthesis and carbon sequestration

Th Nov 20- Plant responses to climate change, and mitigation of these impacts

Tu Nov 25- Recorded lecture on forests for climate change mitigation (asynchronous)

Th Nov 27- Thanksgiving Day holiday

Tu Dec 2- Maximizing carbon sequestration

Th Dec 4- Final exam on the last day of class, NOT ON THE UW-ASSIGNED DAY

Course evaluations are due this week

 

Religious Accommodation

Washington state law requires that UW develop a policy for accommodation of student absences or significant hardship due to reasons of faith or conscience, or for organized religious activities. The UW’s policy, including more information about how to request an accommodation, is available at Religious Accommodations Policy (https://registrar.washington.edu/staffandfaculty/religious-accommodations-policy/). Accommodations must be requested within the first two weeks of this course using the Religious Accommodations Request form (https://registrar.washington.edu/students/religious-accommodations-request/).

 

Disability Access and Accommodation

It is the policy and practice of the University of Washington to create accessible learning environments consistent with federal and state law, including establishing reasonable accommodations for all students. If you have already established accommodations with Disability Resources for Students (DRS), please activate your accommodations via myDRS so that we can discuss how they will be implemented in this course.  You will need to schedule exams with DRS Center for extended time allowances

 

If you have not yet established services through DRS, and you have a temporary health condition or permanent disability that requires accommodations, contact DRS directly (disability.uw.edu) to set up an Access Plan. DRS facilitates the interactive process that establishes reasonable accommodations.  Conditions requiring accommodation include but are not limited to: mental health, attention-related, learning, vision, hearing, physical or health impacts.

Academic Integrity

Plagiarism, cheating, and other misconduct are serious violations of your contract as a student. We expect that you will know and follow the University’s policies on cheating and plagiarism. Any suspected cases of academic misconduct will be handled according to University regulations. More information, including definitions and examples of Academic Misconduct, is available at http://depts.washington.edu/grading/issue1/honesty.htm

 

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